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This site contains course materials, scripts, homeworks, and resources for Computational Biology, Spring 2022.
Lecture Outlines & Homework Assignments
Date | Lecture | Homework |
---|---|---|
January 18 | Introduction | - |
January 19 | - | Homework #1 |
January 20 | GitHub | - |
January 25 | Github II | - |
January 26 | - | Homework #2 |
January 27 | Regular Expressions | - |
February 1 | Markdown | - |
February 2 | - | Homework #3 |
February 3 | LaTeX & Typora | - |
February 8 | Atomic Vectors I | - |
February 9 | Portfolio Check #1 | Homework #4 |
February 10 | Atomic Vectors II | - |
February 15 | Matrices, Lists, Data Frames | - |
February 16 | - | Homework #5 |
February 17 | Data Curation | - |
February 22 | Probability Distributions | - |
February 23 | - | Homework #6 |
February 24 | Experimental Designs | - |
March 1 | Town Meeting Day Recess | - |
March 2 | - | Homework #7 |
March 3 | Functions | - |
March 8 | Spring Recess | - |
March 9 | Spring Recess | - |
March 10 | Spring Recess | - |
March 15 | Structured Programming I | - |
March 16 | Portfolio Check #2 | Homework #8 |
March 17 | Structured Programming II | - |
March 22 | Control Structures I | - |
March 23 | - | Homework #9 |
March 24 | Control Structures II | - |
March 29 | Control Structures III | - |
March 30 | - | Homework #10 |
March 31 | Randomization Tests | - |
April 5 | Batch Processing | - |
April 6 | - | Homework #11 |
April 7 | dplyr | - |
April 12 | ggplot I | - |
April 13 | Portfolio Check #3 | Homework #12 |
April 14 | ggplot II | - |
April 19 | ggplot III | - |
April 27 | - | Catch-up Day |
April 21 | Functional Programming | - |
April 26 | Github III | - |
April 27 | - | Catch-up Day |
April 28 | Shell Commands | - |
May 3 | Catch-up Day | - |
May 4 | Catch-up Day | - |
May 5 | Catch-up Day | - |
Important Dates
- 24 January: Last day to add classes without instructor permission
- 31 January: Add/Drop, Pass/No Pass, Audit Deadline
- 4 April: Last day to withdraw
- 22 April: Honors Day
- 6 May: Last day of classes
- 7,8,11 May: Reading days
- 9,10,12,13 May: Final exam days
Meet The Class of 2022
Student | GitHub and Portfolio Links | Fun Fact |
---|---|---|
Maria Alfaro | GitHub Portfolio | I’ve lived in a tree house in Hawaii, in an ambulance at Mt Hood, and on a sailboat in the Caribbean. |
Lauren Ash | GitHub Portfolio | While interning at Busch Gardens in Florida, I made friends with Rosie the elephant because she would sway and stare at me for hours. |
Noah Beckage | GitHub Portfolio | I ran the Philadelphia marathon in 3 hrs 45 mins |
Emily Beasley | GitHub Portfolio | I have baked bread as a hobby since I started my Master’s degree (my sourdough starter’s name is Julia Child) |
Gillian Berglund | GitHub Portfolio | I have lived in Colorado, Oregon, Florida, New York and Vermont! |
Lauren Berkley | GitHub Portfolio | Fun fact: I am trained in marine mammal stranding response!) |
Sam Brewer | GitHub Portfolio | I collect fairy garden statues! |
Lindsey Carlson | GitHub Portfolio | I have circumnavigated the world by ship. |
Blair Christensen | GitHub Portfolio | I taught high school science in Spain |
Grace Durant | GitHub Portfolio | I know the name of nearly every humpback whale that frequents Stellwagen Bank in Massachusetts. |
Al Freeman | GitHub Portfolio | I play the banjo (terribly). |
David Green | GitHub Portfolio | I’m 22 and I’ve thrown my back out twice |
Nick Gotelli | GitHub Portfolio | For the past 15 years (pre-covid), I have organized musical performances at the annual meeting of the Ecological Society of America (New Orleans 2018). |
Jacqueline Guillemin | GitHub Portfolio | I live with a cat that can say hello! |
Jasmine Hart | GitHub Portfolio | My fun fact is that I’m a certified yoga instructor! |
Andrew McCracken | GitHub Portfolio | I have broken my right foot 3 times |
Stephen Peters-Collaer | GitHub Portfolio | I’m learning to play the mandolin |
Greta Savitsky | GitHub Portfolio | I lived in Copenhagen for a few months |
Anna Schmidt | GitHub Portfolio | I have a four-leaf clover collection since I find them all the time! |
Reed Scott | GitHub Portfolio | I once got lost and ended up in Canada |
Hannah Shafer | GitHub Portfolio | Before I moved to Vermont I was farming full-time. |
Haorui Sun | Github Portfolio | The province I came from has around 100M population. |
Rachel Swanwick | Github Portfolio | I used to work as a snowboard instructor |
Joe Webb | GitHub Portfolio | I am a self taught pianist who can play a mean Pirates of the Caribbean theme song. |